J3_6WQN_015

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

6WQN|1|1|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WQN_015 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1428

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

6WQN|1|1|U|1381
6WQN|1|1|C|1382
6WQN|1|1|G|1383
6WQN|1|1|G|1384
6WQN|1|1|G|1385
6WQN|1|1|U|1386
6WQN|1|1|C|1387
*
6WQN|1|1|G|1418
6WQN|1|1|A|1419
6WQN|1|1|U|1420
6WQN|1|1|A|1421
6WQN|1|1|A|1422
*
6WQN|1|1|U|1439
6WQN|1|1|A|1440

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23