J3_6WQQ_008
3D structure
- PDB id
- 6WQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUG*CUAACC*GAGACAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6WQQ_008 not in the Motif Atlas
- Homologous match to J3_4WF9_007
- Geometric discrepancy: 0.1773
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6WQQ|1|1|U|2118
6WQQ|1|1|U|2119
6WQQ|1|1|G|2120
*
6WQQ|1|1|C|2223
6WQQ|1|1|U|2224
6WQQ|1|1|A|2225
6WQQ|1|1|A|2226
6WQQ|1|1|C|2227
6WQQ|1|1|C|2228
*
6WQQ|1|1|G|2249
6WQQ|1|1|A|2250
6WQQ|1|1|G|2251
6WQQ|1|1|A|2252
6WQQ|1|1|C|2253
6WQQ|1|1|A|2254
6WQQ|1|1|G|2255
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain J
- 50S ribosomal protein L28
Coloring options: