J3_6WQQ_019

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACUAUAG*CGACGAUGGUAG*CGCUAGAGUAGAACGUU

Length

39 nucleotides

Bulged bases

6WQQ|1|2|U|10, 6WQQ|1|2|U|12, 6WQQ|1|2|A|103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WQQ|1|2|G|5
6WQQ|1|2|U|6
6WQQ|1|2|G|7
6WQQ|1|2|A|8
6WQQ|1|2|C|9
6WQQ|1|2|U|10
6WQQ|1|2|A|11
6WQQ|1|2|U|12
6WQQ|1|2|A|13
6WQQ|1|2|G|14
*
6WQQ|1|2|C|66
6WQQ|1|2|G|67
6WQQ|1|2|A|68
6WQQ|1|2|C|69
6WQQ|1|2|G|70
6WQQ|1|2|A|71
6WQQ|1|2|U|72
6WQQ|1|2|G|73
6WQQ|1|2|G|74
6WQQ|1|2|U|75
6WQQ|1|2|A|76
6WQQ|1|2|G|77
*
6WQQ|1|2|C|92
6WQQ|1|2|G|93
6WQQ|1|2|C|94
6WQQ|1|2|U|95
6WQQ|1|2|A|96
6WQQ|1|2|G|97
6WQQ|1|2|A|98
6WQQ|1|2|G|99
6WQQ|1|2|U|100
6WQQ|1|2|A|101
6WQQ|1|2|G|102
6WQQ|1|2|A|103
6WQQ|1|2|A|104
6WQQ|1|2|C|105
6WQQ|1|2|G|106
6WQQ|1|2|U|107
6WQQ|1|2|U|108

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L25

Chain I

50S ribosomal protein L27

Chain Y

50S ribosomal protein L16

Chain a

50S ribosomal protein L18