J3_6WRS_018

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WRS_018 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1175

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WRS|1|1|G|1468
6WRS|1|1|G|1469
6WRS|1|1|G|1470
6WRS|1|1|A|1471
6WRS|1|1|C|1472
6WRS|1|1|G|1473
*
6WRS|1|1|C|1611
6WRS|1|1|C|1612
*
6WRS|1|1|G|1615
6WRS|1|1|A|1616
6WRS|1|1|A|1617
6WRS|1|1|A|1618
6WRS|1|1|A|1619
6WRS|1|1|G|1620
6WRS|1|1|C|1621

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2