J3_6WYV_013

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6WYV|1|I|U|34, 6WYV|1|I|U|448, 6WYV|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6WYV_013 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0747

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|C|32
6WYV|1|I|C|33
6WYV|1|I|U|34
6WYV|1|I|G|35
*
6WYV|1|I|C|445
6WYV|1|I|G|446
6WYV|1|I|A|447
6WYV|1|I|U|448
6WYV|1|I|A|449
6WYV|1|I|G|450
6WYV|1|I|U|451
6WYV|1|I|G|452
6WYV|1|I|A|453
6WYV|1|I|A|454
6WYV|1|I|C|455
6WYV|1|I|C|456
6WYV|1|I|A|457
6WYV|1|I|G|458
6WYV|1|I|U|459
6WYV|1|I|A|460
6WYV|1|I|C|461
*
6WYV|1|I|G|468
6WYV|1|I|G|469
6WYV|1|I|A|470
6WYV|1|I|A|471
6WYV|1|I|A|472
6WYV|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4