J3_6X9Q_007
3D structure
- PDB id
- 6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6X9Q|1|D|A|975, 6X9Q|1|D|G|976, 6X9Q|1|D|A|978
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6X9Q_007 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0707
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6X9Q|1|D|U|955
6X9Q|1|D|U|956
6X9Q|1|D|U|957
6X9Q|1|D|A|958
6X9Q|1|D|A|959
6X9Q|1|D|U|960
6X9Q|1|D|U|961
6X9Q|1|D|C|962
*
6X9Q|1|D|G|973
6X9Q|1|D|A|974
6X9Q|1|D|A|975
6X9Q|1|D|G|976
6X9Q|1|D|A|977
6X9Q|1|D|A|978
6X9Q|1|D|C|979
6X9Q|1|D|C|980
6X9Q|1|D|U|981
6X9Q|1|D|U|982
6X9Q|1|D|A|983
6X9Q|1|D|C|984
*
6X9Q|1|D|G|1221
6X9Q|1|D|G|1222
6X9Q|1|D|C|1223
6X9Q|1|D|U|1224
6X9Q|1|D|A|1225
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
- Chain W
- 30S ribosomal protein S19
- Chain X
- 30S ribosomal protein S13
Coloring options: