J3_6XA1_019
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- A(PSU)CUUUU*A(PSU)(OMG)GAAUAGG*CAUGAU
- Length
- 23 nucleotides
- Bulged bases
- 6XA1|1|S2|C|687, 6XA1|1|S2|G|868, 6XA1|1|S2|U|871, 6XA1|1|S2|G|873, 6XA1|1|S2|A|913
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XA1|1|S2|A|685
6XA1|1|S2|PSU|686
6XA1|1|S2|C|687
6XA1|1|S2|U|688
6XA1|1|S2|U|689
6XA1|1|S2|U|799
6XA1|1|S2|U|800
*
6XA1|1|S2|A|865
6XA1|1|S2|PSU|866
6XA1|1|S2|OMG|867
6XA1|1|S2|G|868
6XA1|1|S2|A|869
6XA1|1|S2|A|870
6XA1|1|S2|U|871
6XA1|1|S2|A|872
6XA1|1|S2|G|873
6XA1|1|S2|G|874
*
6XA1|1|S2|C|912
6XA1|1|S2|A|913
6XA1|1|S2|U|914
6XA1|1|S2|G|915
6XA1|1|S2|A|916
6XA1|1|S2|U|917
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
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