J3_6XA1_034

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

6XA1|1|L5|C|695, 6XA1|1|L5|C|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|C|442
6XA1|1|L5|A|443
6XA1|1|L5|G|444
6XA1|1|L5|U|445
6XA1|1|L5|C|446
*
6XA1|1|L5|G|692
6XA1|1|L5|U|693
6XA1|1|L5|G|694
6XA1|1|L5|C|695
6XA1|1|L5|G|696
*
6XA1|1|L5|C|1279
6XA1|1|L5|G|1280
6XA1|1|L5|A|1281
6XA1|1|L5|C|1282
6XA1|1|L5|G|1283

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28