J3_6XA1_036
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 6XA1|1|L5|C|2457, 6XA1|1|L5|A|2459, 6XA1|1|L5|G|2462, 6XA1|1|L5|G|2490, 6XA1|1|L5|C|2491
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XA1|1|L5|A|2438
6XA1|1|L5|G|2439
6XA1|1|L5|A|2440
6XA1|1|L5|U|2441
6XA1|1|L5|G|2442
6XA1|1|L5|G|2443
*
6XA1|1|L5|C|2452
6XA1|1|L5|G|2453
6XA1|1|L5|U|2454
6XA1|1|L5|U|2455
6XA1|1|L5|C|2456
6XA1|1|L5|C|2457
6XA1|1|L5|G|2458
6XA1|1|L5|A|2459
6XA1|1|L5|A|2460
6XA1|1|L5|G|2461
6XA1|1|L5|G|2462
6XA1|1|L5|G|2463
*
6XA1|1|L5|C|2488
6XA1|1|L5|G|2489
6XA1|1|L5|G|2490
6XA1|1|L5|C|2491
6XA1|1|L5|C|2492
6XA1|1|L5|G|2493
6XA1|1|L5|A|2494
6XA1|1|L5|PSU|2495
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
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