J3_6XA1_039

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

6XA1|1|L5|U|4847, 6XA1|1|L5|A|4903, 6XA1|1|L5|C|4905, 6XA1|1|L5|A|4908, 6XA1|1|L5|C|4909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|G|4720
6XA1|1|L5|U|4721
6XA1|1|L5|U|4722
6XA1|1|L5|G|4723
*
6XA1|1|L5|C|4844
6XA1|1|L5|C|4845
6XA1|1|L5|U|4846
6XA1|1|L5|U|4847
6XA1|1|L5|C|4848
*
6XA1|1|L5|G|4901
6XA1|1|L5|C|4902
6XA1|1|L5|A|4903
6XA1|1|L5|C|4904
6XA1|1|L5|C|4905
6XA1|1|L5|G|4906
6XA1|1|L5|C|4907
6XA1|1|L5|A|4908
6XA1|1|L5|C|4909
6XA1|1|L5|G|4910
6XA1|1|L5|U|4911
6XA1|1|L5|U|4912
6XA1|1|L5|C|4913

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a