J3_6XA1_040

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6XA1|1|L5|U|4954, 6XA1|1|L5|C|4955, 6XA1|1|L5|A|5026

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|C|4935
6XA1|1|L5|A|4936
6XA1|1|L5|PSU|4937
*
6XA1|1|L5|G|4951
6XA1|1|L5|C|4952
6XA1|1|L5|U|4953
6XA1|1|L5|U|4954
6XA1|1|L5|C|4955
6XA1|1|L5|U|4956
*
6XA1|1|L5|A|5025
6XA1|1|L5|A|5026
6XA1|1|L5|G|5027
6XA1|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31