J3_6XDQ_010
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XDQ_010 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.0831
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XDQ|1|D|U|1073
6XDQ|1|D|G|1074
*
6XDQ|1|D|U|1083
6XDQ|1|D|G|1084
6XDQ|1|D|U|1085
6XDQ|1|D|U|1086
6XDQ|1|D|G|1087
*
6XDQ|1|D|C|1098
6XDQ|1|D|G|1099
6XDQ|1|D|C|1100
6XDQ|1|D|A|1101
6XDQ|1|D|A|1102
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain AG
- Transcription termination/antitermination protein NusA
- Chain F
- 30S ribosomal protein S21
- Chain G
- 30S ribosomal protein S2
- Chain K
- 30S ribosomal protein S5
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