J3_6XDQ_021
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XDQ_021 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.0841
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XDQ|1|a|C|2091
6XDQ|1|a|U|2092
6XDQ|1|a|G|2093
*
6XDQ|1|a|C|2196
6XDQ|1|a|U|2197
6XDQ|1|a|A|2198
6XDQ|1|a|A|2199
6XDQ|1|a|C|2200
*
6XDQ|1|a|G|2223
6XDQ|1|a|G|2224
6XDQ|1|a|A|2225
6XDQ|1|a|C|2226
6XDQ|1|a|A|2227
6XDQ|1|a|G|2228
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L28
- Chain h
- 50S ribosomal protein L2
- Chain r
- 50S ribosomal protein L9
Coloring options: