J3_6XDQ_033
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6XDQ|1|a|U|34, 6XDQ|1|a|U|448, 6XDQ|1|a|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XDQ_033 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0617
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6XDQ|1|a|C|32
6XDQ|1|a|C|33
6XDQ|1|a|U|34
6XDQ|1|a|G|35
*
6XDQ|1|a|C|445
6XDQ|1|a|G|446
6XDQ|1|a|A|447
6XDQ|1|a|U|448
6XDQ|1|a|A|449
6XDQ|1|a|G|450
6XDQ|1|a|U|451
6XDQ|1|a|G|452
6XDQ|1|a|A|453
6XDQ|1|a|A|454
6XDQ|1|a|C|455
6XDQ|1|a|C|456
6XDQ|1|a|A|457
6XDQ|1|a|G|458
6XDQ|1|a|U|459
6XDQ|1|a|A|460
6XDQ|1|a|C|461
*
6XDQ|1|a|G|468
6XDQ|1|a|G|469
6XDQ|1|a|A|470
6XDQ|1|a|A|471
6XDQ|1|a|A|472
6XDQ|1|a|G|473
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L23
- Chain l
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L34
- Chain z
- 50S ribosomal protein L20
Coloring options: