3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
6XDR|1|D|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XDR_003 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.054
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6XDR|1|D|U|672
6XDR|1|D|A|673
*
6XDR|1|D|U|717
6XDR|1|D|A|718
6XDR|1|D|C|719
6XDR|1|D|C|720
6XDR|1|D|G|721
6XDR|1|D|G|722
6XDR|1|D|U|723
6XDR|1|D|G|724
6XDR|1|D|G|725
*
6XDR|1|D|C|732
6XDR|1|D|G|733
6XDR|1|D|G|734

Current chains

Chain D
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S18
Chain F
30S ribosomal protein S21
Chain L
30S ribosomal protein S6
Chain Q
30S ribosomal protein S11
Chain T
30S ribosomal protein S15

Coloring options:


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