J3_6XE0_001

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XE0_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1165

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XE0|1|W|G|46
6XE0|1|W|C|47
*
6XE0|1|W|G|361
6XE0|1|W|G|362
6XE0|1|W|A|363
6XE0|1|W|A|364
6XE0|1|W|U|365
6XE0|1|W|A|366
6XE0|1|W|U|367
*
6XE0|1|W|A|393
6XE0|1|W|G|394
6XE0|1|W|C|395

Current chains

Chain W

16s rRNA

Nearby chains

Chain K

30S ribosomal protein S12

Chain P

30S ribosomal protein S16