J3_6XHV_058

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6XHV|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHV_058 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0413

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6XHV|1|1A|C|297
6XHV|1|1A|G|298
6XHV|1|1A|A|299
6XHV|1|1A|A|300
6XHV|1|1A|G|301
*
6XHV|1|1A|C|316
6XHV|1|1A|G|317
6XHV|1|1A|C|318
6XHV|1|1A|C|319
6XHV|1|1A|A|320
6XHV|1|1A|G|321
6XHV|1|1A|A|322
6XHV|1|1A|G|323
6XHV|1|1A|A|324
6XHV|1|1A|G|325
*
6XHV|1|1A|C|337
6XHV|1|1A|G|338
6XHV|1|1A|U|339
6XHV|1|1A|A|340
6XHV|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24