J3_6XHV_060

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHV_060 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.042

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6XHV|1|1A|G|1424
6XHV|1|1A|G|1425
6XHV|1|1A|G|1426
6XHV|1|1A|A|1427
6XHV|1|1A|C|1428
6XHV|1|1A|G|1429
*
6XHV|1|1A|C|1564
6XHV|1|1A|C|1565
*
6XHV|1|1A|G|1568
6XHV|1|1A|A|1569
6XHV|1|1A|A|1570
6XHV|1|1A|A|1571
6XHV|1|1A|A|1572
6XHV|1|1A|G|1573
6XHV|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2