J3_6XHW_004

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6XHW|1|1A|G|686, 6XHW|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHW_004 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0378

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6XHW|1|1A|C|683
6XHW|1|1A|G|684
6XHW|1|1A|A|685
6XHW|1|1A|G|686
6XHW|1|1A|C|687
6XHW|1|1A|U|688
6XHW|1|1A|A|689
*
6XHW|1|1A|U|773
6XHW|1|1A|A|774
6XHW|1|1A|G|775
*
6XHW|1|1A|C|791
6XHW|1|1A|G|792
6XHW|1|1A|A|793
6XHW|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2