J3_6XHW_007

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHW_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0547

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6XHW|1|1A|C|1298
6XHW|1|1A|G|1299
6XHW|1|1A|U|1300
6XHW|1|1A|A|1301
6XHW|1|1A|A|1302
6XHW|1|1A|G|1303
*
6XHW|1|1A|C|1625
6XHW|1|1A|G|1626
6XHW|1|1A|G|1627
*
6XHW|1|1A|U|1639
6XHW|1|1A|C|1640
6XHW|1|1A|A|1641
6XHW|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains