J3_6XHW_070

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6XHW|1|2a|C|48, 6XHW|1|2a|A|50, 6XHW|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHW_070 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0695

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XHW|1|2a|G|46
6XHW|1|2a|C|47
6XHW|1|2a|C|48
6XHW|1|2a|U|49
6XHW|1|2a|A|50
6XHW|1|2a|A|51
6XHW|1|2a|G|52
*
6XHW|1|2a|U|359
6XHW|1|2a|A|360
6XHW|1|2a|G|361
6XHW|1|2a|G|362
6XHW|1|2a|A|363
6XHW|1|2a|A|364
6XHW|1|2a|U|365
6XHW|1|2a|C|366
6XHW|1|2a|U|367
*
6XHW|1|2a|A|393
6XHW|1|2a|G|394
6XHW|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16