J3_6XHX_007

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

6XHX|1|1A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHX_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0414

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6XHX|1|1A|C|1298
6XHX|1|1A|G|1299
6XHX|1|1A|U|1300
6XHX|1|1A|A|1301
6XHX|1|1A|A|1302
6XHX|1|1A|G|1303
*
6XHX|1|1A|C|1625
6XHX|1|1A|G|1626
6XHX|1|1A|G|1627
*
6XHX|1|1A|U|1639
6XHX|1|1A|C|1640
6XHX|1|1A|A|1641
6XHX|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17