J3_6XHX_012

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6XHX|1|1A|A|2518, 6XHX|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHX_012 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0308

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6XHX|1|1A|C|2517
6XHX|1|1A|A|2518
6XHX|1|1A|U|2519
6XHX|1|1A|C|2520
*
6XHX|1|1A|G|2545
6XHX|1|1A|U|2546
6XHX|1|1A|U|2547
*
6XHX|1|1A|A|2561
6XHX|1|1A|U|2562
6XHX|1|1A|U|2563
6XHX|1|1A|A|2564
6XHX|1|1A|A|2565
6XHX|1|1A|A|2566
6XHX|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14