J3_6XHX_059

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHX_059 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0633

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6XHX|1|1A|G|1424
6XHX|1|1A|G|1425
6XHX|1|1A|G|1426
6XHX|1|1A|A|1427
6XHX|1|1A|C|1428
6XHX|1|1A|G|1429
*
6XHX|1|1A|C|1564
6XHX|1|1A|C|1565
*
6XHX|1|1A|G|1568
6XHX|1|1A|A|1569
6XHX|1|1A|A|1570
6XHX|1|1A|A|1571
6XHX|1|1A|A|1572
6XHX|1|1A|G|1573
6XHX|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2