J3_6XHY_060
3D structure
- PDB id
- 6XHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6XHY|1|1a|C|48, 6XHY|1|1a|A|50, 6XHY|1|1a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XHY_060 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.063
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6XHY|1|1a|G|46
6XHY|1|1a|C|47
6XHY|1|1a|C|48
6XHY|1|1a|U|49
6XHY|1|1a|A|50
6XHY|1|1a|A|51
6XHY|1|1a|G|52
*
6XHY|1|1a|U|359
6XHY|1|1a|A|360
6XHY|1|1a|G|361
6XHY|1|1a|G|362
6XHY|1|1a|A|363
6XHY|1|1a|A|364
6XHY|1|1a|U|365
6XHY|1|1a|C|366
6XHY|1|1a|U|367
*
6XHY|1|1a|A|393
6XHY|1|1a|G|394
6XHY|1|1a|C|395
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
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