J3_6XHY_065

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6XHY|1|2A|U|504, 6XHY|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHY_065 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0562

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6XHY|1|2A|G|30
6XHY|1|2A|C|31
*
6XHY|1|2A|G|474
6XHY|1|2A|U|475
6XHY|1|2A|G|476
6XHY|1|2A|A|477
6XHY|1|2A|A|478
6XHY|1|2A|A|479
6XHY|1|2A|A|480
6XHY|1|2A|G|481
6XHY|1|2A|A|482
6XHY|1|2A|A|483
6XHY|1|2A|C|484
*
6XHY|1|2A|G|496
6XHY|1|2A|A|497
6XHY|1|2A|G|498
6XHY|1|2A|U|499
6XHY|1|2A|G|500
6XHY|1|2A|A|501
6XHY|1|2A|A|502
6XHY|1|2A|A|503
6XHY|1|2A|U|504
6XHY|1|2A|A|505
6XHY|1|2A|G|506
6XHY|1|2A|A|507
6XHY|1|2A|G|508
6XHY|1|2A|C|509
6XHY|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24