J3_6XHY_066

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6XHY|1|2A|C|34, 6XHY|1|2A|U|448, 6XHY|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHY_066 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0822

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

6XHY|1|2A|C|32
6XHY|1|2A|U|33
6XHY|1|2A|C|34
6XHY|1|2A|G|35
*
6XHY|1|2A|C|445
6XHY|1|2A|G|446
6XHY|1|2A|A|447
6XHY|1|2A|U|448
6XHY|1|2A|A|449
6XHY|1|2A|G|450
6XHY|1|2A|C|451
6XHY|1|2A|G|452
6XHY|1|2A|C|453
6XHY|1|2A|A|454
6XHY|1|2A|C|455
6XHY|1|2A|C|456
6XHY|1|2A|A|457
6XHY|1|2A|G|458
6XHY|1|2A|U|459
6XHY|1|2A|A|460
6XHY|1|2A|C|461
*
6XHY|1|2A|G|468
6XHY|1|2A|G|469
6XHY|1|2A|A|470
6XHY|1|2A|A|471
6XHY|1|2A|A|472
6XHY|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23