J3_6XIQ_005

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUCC*GGGUUAGUC*GUA

Length

16 nucleotides

Bulged bases

6XIQ|1|1|U|1523, 6XIQ|1|1|G|1525, 6XIQ|1|1|U|1526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|U|1494
6XIQ|1|1|U|1495
6XIQ|1|1|C|1496
6XIQ|1|1|C|1497
*
6XIQ|1|1|G|1519
6XIQ|1|1|G|1520
6XIQ|1|1|G|1521
6XIQ|1|1|U|1522
6XIQ|1|1|U|1523
6XIQ|1|1|A|1524
6XIQ|1|1|G|1525
6XIQ|1|1|U|1526
6XIQ|1|1|C|1527
*
6XIQ|1|1|G|1833
6XIQ|1|1|U|1834
6XIQ|1|1|A|1835

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain R

60S ribosomal protein L19-A

Chain X

60S ribosomal protein L25

Chain g

60S ribosomal protein L34-A

Chain l

60S ribosomal protein L39