J3_6XIQ_006
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CACCAU
- Length
- 23 nucleotides
- Bulged bases
- 6XIQ|1|1|U|1553, 6XIQ|1|1|U|1555, 6XIQ|1|1|C|1556, 6XIQ|1|1|A|1557, 6XIQ|1|1|A|1558, 6XIQ|1|1|A|1580, 6XIQ|1|1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|A|1537
6XIQ|1|1|G|1538
6XIQ|1|1|A|1539
6XIQ|1|1|U|1540
6XIQ|1|1|G|1541
6XIQ|1|1|G|1542
*
6XIQ|1|1|C|1551
6XIQ|1|1|G|1552
6XIQ|1|1|U|1553
6XIQ|1|1|U|1554
6XIQ|1|1|U|1555
6XIQ|1|1|C|1556
6XIQ|1|1|A|1557
6XIQ|1|1|A|1558
6XIQ|1|1|A|1559
6XIQ|1|1|G|1560
6XIQ|1|1|G|1561
*
6XIQ|1|1|C|1579
6XIQ|1|1|A|1580
6XIQ|1|1|C|1581
6XIQ|1|1|C|1582
6XIQ|1|1|A|1583
6XIQ|1|1|U|1584
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- RPL8A isoform 1
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain j
- 60S ribosomal protein L37-A
Coloring options: