J3_6XIQ_009

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

6XIQ|1|1|A|2702, 6XIQ|1|1|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|C|2664
6XIQ|1|1|U|2665
6XIQ|1|1|C|2666
*
6XIQ|1|1|G|2690
6XIQ|1|1|A|2691
6XIQ|1|1|A|2692
*
6XIQ|1|1|U|2701
6XIQ|1|1|A|2702
6XIQ|1|1|A|2703
6XIQ|1|1|A|2704
6XIQ|1|1|A|2705
6XIQ|1|1|G|2706

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D

RPL5 isoform 1

Chain J

RPL11B isoform 1

Chain T

60S ribosomal protein L21-A