J3_6XIQ_022

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

6XIQ|1|2|U|1473, 6XIQ|1|2|U|1538, 6XIQ|1|2|G|1572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|2|C|1470
6XIQ|1|2|A|1471
6XIQ|1|2|C|1472
6XIQ|1|2|U|1473
6XIQ|1|2|G|1474
*
6XIQ|1|2|C|1533
6XIQ|1|2|G|1534
6XIQ|1|2|U|1535
6XIQ|1|2|G|1536
6XIQ|1|2|C|1537
6XIQ|1|2|U|1538
6XIQ|1|2|G|1539
6XIQ|1|2|G|1540
*
6XIQ|1|2|C|1571
6XIQ|1|2|G|1572
6XIQ|1|2|A|1573
6XIQ|1|2|G|1574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S18-A

Chain AJ

40S ribosomal protein S19-A

Chain AP

RPS25A isoform 1

Chain v

Rps5p