J3_6XIQ_025
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 6XIQ|1|1|A|116, 6XIQ|1|1|U|117, 6XIQ|1|1|U|119, 6XIQ|1|1|G|120, 6XIQ|1|1|A|121, 6XIQ|1|1|U|147, 6XIQ|1|1|A|150, 6XIQ|1|1|U|152, 6XIQ|1|1|U|153, 6XIQ|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|C|113
6XIQ|1|1|A|114
6XIQ|1|1|A|115
6XIQ|1|1|A|116
6XIQ|1|1|U|117
6XIQ|1|1|U|118
6XIQ|1|1|U|119
6XIQ|1|1|G|120
6XIQ|1|1|A|121
6XIQ|1|1|A|122
6XIQ|1|1|A|123
6XIQ|1|1|U|124
*
6XIQ|1|1|A|144
6XIQ|1|1|G|145
6XIQ|1|1|U|146
6XIQ|1|1|U|147
6XIQ|1|1|G|148
6XIQ|1|1|U|149
6XIQ|1|1|A|150
6XIQ|1|1|A|151
6XIQ|1|1|U|152
6XIQ|1|1|U|153
6XIQ|1|1|U|154
6XIQ|1|1|G|155
6XIQ|1|1|G|156
6XIQ|1|1|A|157
6XIQ|1|1|G|158
*
6XIQ|1|1|C|263
6XIQ|1|1|G|264
6XIQ|1|1|A|265
6XIQ|1|1|A|266
6XIQ|1|1|G|267
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- RPL8A isoform 1
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: