J3_6XIQ_026
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAGG*CGUGUG
- Length
- 22 nucleotides
- Bulged bases
- 6XIQ|1|1|U|188, 6XIQ|1|1|G|206, 6XIQ|1|1|U|210, 6XIQ|1|1|U|228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|C|185
6XIQ|1|1|U|186
6XIQ|1|1|A|187
6XIQ|1|1|U|188
6XIQ|1|1|G|189
*
6XIQ|1|1|C|205
6XIQ|1|1|G|206
6XIQ|1|1|U|207
6XIQ|1|1|C|208
6XIQ|1|1|A|209
6XIQ|1|1|U|210
6XIQ|1|1|A|211
6XIQ|1|1|G|212
6XIQ|1|1|A|213
6XIQ|1|1|G|214
6XIQ|1|1|G|215
*
6XIQ|1|1|C|226
6XIQ|1|1|G|227
6XIQ|1|1|U|228
6XIQ|1|1|G|229
6XIQ|1|1|U|230
6XIQ|1|1|G|231
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- RPL4A isoform 1
- Chain Y
- 60S ribosomal protein L26-A
Coloring options: