3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GAGACCGAUAGCGAACAAGUAC*GGAAAG*CUUGGUUC
Length
36 nucleotides
Bulged bases
6XIQ|1|1|A|338, 6XIQ|1|1|U|343, 6XIQ|1|1|A|348, 6XIQ|1|1|A|351, 6XIQ|1|1|G|353, 6XIQ|1|1|U|354, 6XIQ|1|4|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XIQ|1|1|G|335
6XIQ|1|1|A|336
6XIQ|1|1|G|337
6XIQ|1|1|A|338
6XIQ|1|1|C|339
6XIQ|1|1|C|340
6XIQ|1|1|G|341
6XIQ|1|1|A|342
6XIQ|1|1|U|343
6XIQ|1|1|A|344
6XIQ|1|1|G|345
6XIQ|1|1|C|346
6XIQ|1|1|G|347
6XIQ|1|1|A|348
6XIQ|1|1|A|349
6XIQ|1|1|C|350
6XIQ|1|1|A|351
6XIQ|1|1|A|352
6XIQ|1|1|G|353
6XIQ|1|1|U|354
6XIQ|1|1|A|355
6XIQ|1|1|C|356
*
6XIQ|1|1|G|363
6XIQ|1|1|G|364
6XIQ|1|1|A|365
6XIQ|1|1|A|366
6XIQ|1|1|A|367
6XIQ|1|1|G|368
*
6XIQ|1|4|C|21
6XIQ|1|4|U|22
6XIQ|1|4|U|23
6XIQ|1|4|G|24
6XIQ|1|4|G|25
6XIQ|1|4|U|26
6XIQ|1|4|U|27
6XIQ|1|4|C|28

Current chains

Chain 1
35S ribosomal RNA
Chain 4
5.8S ribosomal RNA

Nearby chains

Chain C
RPL4A isoform 1
Chain L
60S ribosomal protein L13-A
Chain Y
60S ribosomal protein L26-A
Chain j
60S ribosomal protein L37-A
Chain l
60S ribosomal protein L39

Coloring options:

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