J3_6XIQ_027
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAGACCGAUAGCGAACAAGUAC*GGAAAG*CUUGGUUC
- Length
- 36 nucleotides
- Bulged bases
- 6XIQ|1|1|A|338, 6XIQ|1|1|U|343, 6XIQ|1|1|A|348, 6XIQ|1|1|A|351, 6XIQ|1|1|G|353, 6XIQ|1|1|U|354, 6XIQ|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|G|335
6XIQ|1|1|A|336
6XIQ|1|1|G|337
6XIQ|1|1|A|338
6XIQ|1|1|C|339
6XIQ|1|1|C|340
6XIQ|1|1|G|341
6XIQ|1|1|A|342
6XIQ|1|1|U|343
6XIQ|1|1|A|344
6XIQ|1|1|G|345
6XIQ|1|1|C|346
6XIQ|1|1|G|347
6XIQ|1|1|A|348
6XIQ|1|1|A|349
6XIQ|1|1|C|350
6XIQ|1|1|A|351
6XIQ|1|1|A|352
6XIQ|1|1|G|353
6XIQ|1|1|U|354
6XIQ|1|1|A|355
6XIQ|1|1|C|356
*
6XIQ|1|1|G|363
6XIQ|1|1|G|364
6XIQ|1|1|A|365
6XIQ|1|1|A|366
6XIQ|1|1|A|367
6XIQ|1|1|G|368
*
6XIQ|1|4|C|21
6XIQ|1|4|U|22
6XIQ|1|4|U|23
6XIQ|1|4|G|24
6XIQ|1|4|G|25
6XIQ|1|4|U|26
6XIQ|1|4|U|27
6XIQ|1|4|C|28
Current chains
- Chain 1
- 35S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- RPL4A isoform 1
- Chain L
- 60S ribosomal protein L13-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: