J3_6XIQ_028
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAUGAAAAGAACU*AGAGUGAAAAAGUACG*CUC
- Length
- 32 nucleotides
- Bulged bases
- 6XIQ|1|1|G|371, 6XIQ|1|1|A|373, 6XIQ|1|1|A|375, 6XIQ|1|1|U|393, 6XIQ|1|1|A|395, 6XIQ|1|1|A|398, 6XIQ|1|1|A|399, 6XIQ|1|1|U|401, 6XIQ|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|G|368
6XIQ|1|1|A|369
6XIQ|1|1|U|370
6XIQ|1|1|G|371
6XIQ|1|1|A|372
6XIQ|1|1|A|373
6XIQ|1|1|A|374
6XIQ|1|1|A|375
6XIQ|1|1|G|376
6XIQ|1|1|A|377
6XIQ|1|1|A|378
6XIQ|1|1|C|379
6XIQ|1|1|U|380
*
6XIQ|1|1|A|389
6XIQ|1|1|G|390
6XIQ|1|1|A|391
6XIQ|1|1|G|392
6XIQ|1|1|U|393
6XIQ|1|1|G|394
6XIQ|1|1|A|395
6XIQ|1|1|A|396
6XIQ|1|1|A|397
6XIQ|1|1|A|398
6XIQ|1|1|A|399
6XIQ|1|1|G|400
6XIQ|1|1|U|401
6XIQ|1|1|A|402
6XIQ|1|1|C|403
6XIQ|1|1|G|404
*
6XIQ|1|4|C|19
6XIQ|1|4|U|20
6XIQ|1|4|C|21
Current chains
- Chain 1
- 35S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- RPL4A isoform 1
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
Coloring options: