J3_6XIQ_029

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGACAUGG*CUGG*CAUAAUG

Length

20 nucleotides

Bulged bases

6XIQ|1|1|A|436, 6XIQ|1|1|A|440, 6XIQ|1|1|U|441, 6XIQ|1|1|G|442, 6XIQ|1|1|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|C|435
6XIQ|1|1|A|436
6XIQ|1|1|G|437
6XIQ|1|1|A|438
6XIQ|1|1|C|439
6XIQ|1|1|A|440
6XIQ|1|1|U|441
6XIQ|1|1|G|442
6XIQ|1|1|G|443
*
6XIQ|1|1|C|492
6XIQ|1|1|U|493
6XIQ|1|1|G|494
6XIQ|1|1|G|495
*
6XIQ|1|1|C|618
6XIQ|1|1|A|619
6XIQ|1|1|U|620
6XIQ|1|1|A|621
6XIQ|1|1|A|622
6XIQ|1|1|U|623
6XIQ|1|1|G|624

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain e

RPL32 isoform 1

Chain f

60S ribosomal protein L33-A