3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGUGAACUAU*AUAG*CGAACC
Length
20 nucleotides
Bulged bases
6XIQ|1|1|A|817, 6XIQ|1|1|U|905, 6XIQ|1|1|G|924, 6XIQ|1|1|A|925
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XIQ|1|1|G|812
6XIQ|1|1|G|813
6XIQ|1|1|U|814
6XIQ|1|1|G|815
6XIQ|1|1|A|816
6XIQ|1|1|A|817
6XIQ|1|1|C|818
6XIQ|1|1|U|819
6XIQ|1|1|A|820
6XIQ|1|1|U|821
*
6XIQ|1|1|A|904
6XIQ|1|1|U|905
6XIQ|1|1|A|906
6XIQ|1|1|G|907
*
6XIQ|1|1|C|923
6XIQ|1|1|G|924
6XIQ|1|1|A|925
6XIQ|1|1|A|926
6XIQ|1|1|C|927
6XIQ|1|1|C|928

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain C
RPL4A isoform 1
Chain N
60S ribosomal protein L15-A
Chain j
60S ribosomal protein L37-A

Coloring options:

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