3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
AUAGGGUGAAG*UGGAGGCUCGUAGC*GUCGAAU
Length
32 nucleotides
Bulged bases
6XIQ|1|1|U|862, 6XIQ|1|1|G|894
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XIQ|1|1|A|828
6XIQ|1|1|U|829
6XIQ|1|1|A|830
6XIQ|1|1|G|831
6XIQ|1|1|G|832
6XIQ|1|1|G|833
6XIQ|1|1|U|834
6XIQ|1|1|G|835
6XIQ|1|1|A|836
6XIQ|1|1|A|837
6XIQ|1|1|G|838
*
6XIQ|1|1|U|855
6XIQ|1|1|G|856
6XIQ|1|1|G|857
6XIQ|1|1|A|858
6XIQ|1|1|G|859
6XIQ|1|1|G|860
6XIQ|1|1|C|861
6XIQ|1|1|U|862
6XIQ|1|1|C|863
6XIQ|1|1|G|864
6XIQ|1|1|U|865
6XIQ|1|1|A|866
6XIQ|1|1|G|867
6XIQ|1|1|C|868
*
6XIQ|1|1|G|891
6XIQ|1|1|U|892
6XIQ|1|1|C|893
6XIQ|1|1|G|894
6XIQ|1|1|A|895
6XIQ|1|1|A|896
6XIQ|1|1|U|897

Current chains

Chain 1
35S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain R
60S ribosomal protein L19-A
Chain g
60S ribosomal protein L34-A
Chain p
60S ribosomal protein L43-A

Coloring options:

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