J3_6XIQ_033
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGUUU*AGAAG*CAUUUGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6XIQ|1|1|G|984, 6XIQ|1|1|U|985, 6XIQ|1|1|A|1065, 6XIQ|1|1|U|1094, 6XIQ|1|1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|C|982
6XIQ|1|1|A|983
6XIQ|1|1|G|984
6XIQ|1|1|U|985
6XIQ|1|1|U|986
6XIQ|1|1|U|987
*
6XIQ|1|1|A|1062
6XIQ|1|1|G|1063
6XIQ|1|1|A|1064
6XIQ|1|1|A|1065
6XIQ|1|1|G|1066
*
6XIQ|1|1|C|1092
6XIQ|1|1|A|1093
6XIQ|1|1|U|1094
6XIQ|1|1|U|1095
6XIQ|1|1|U|1096
6XIQ|1|1|G|1097
6XIQ|1|1|A|1098
6XIQ|1|1|A|1099
6XIQ|1|1|U|1100
6XIQ|1|1|G|1101
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- RPL29 isoform 1
Coloring options: