J3_6XIQ_034

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGG*CACC

Length

26 nucleotides

Bulged bases

6XIQ|1|1|A|1231, 6XIQ|1|1|U|1235, 6XIQ|1|1|G|1236, 6XIQ|1|1|U|1253, 6XIQ|1|1|U|1258, 6XIQ|1|1|A|1260, 6XIQ|1|1|G|1261, 6XIQ|1|1|C|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|1|G|1230
6XIQ|1|1|A|1231
6XIQ|1|1|C|1232
6XIQ|1|1|G|1233
6XIQ|1|1|G|1234
6XIQ|1|1|U|1235
6XIQ|1|1|G|1236
6XIQ|1|1|G|1237
6XIQ|1|1|C|1238
*
6XIQ|1|1|G|1250
6XIQ|1|1|A|1251
6XIQ|1|1|A|1252
6XIQ|1|1|U|1253
6XIQ|1|1|C|1254
6XIQ|1|1|C|1255
6XIQ|1|1|G|1256
6XIQ|1|1|C|1257
6XIQ|1|1|U|1258
6XIQ|1|1|A|1259
6XIQ|1|1|A|1260
6XIQ|1|1|G|1261
6XIQ|1|1|G|1262
*
6XIQ|1|1|C|1277
6XIQ|1|1|A|1278
6XIQ|1|1|C|1279
6XIQ|1|1|C|1280

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain P0

RPP0 isoform 1

Chain P2

RPL12A isoform 1

Chain m

60S ribosomal protein L40