J3_6XIQ_038
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAGCUG*CACGUUCUAGCAUUCAAG*UGAUC
- Length
- 29 nucleotides
- Bulged bases
- 6XIQ|1|1|U|2532, 6XIQ|1|1|A|2547, 6XIQ|1|1|G|2549, 6XIQ|1|1|U|2550, 6XIQ|1|1|U|2551, 6XIQ|1|1|A|2554, 6XIQ|1|1|A|2557, 6XIQ|1|1|C|2560, 6XIQ|1|1|A|2580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|G|2528
6XIQ|1|1|A|2529
6XIQ|1|1|G|2530
6XIQ|1|1|C|2531
6XIQ|1|1|U|2532
6XIQ|1|1|G|2533
*
6XIQ|1|1|C|2546
6XIQ|1|1|A|2547
6XIQ|1|1|C|2548
6XIQ|1|1|G|2549
6XIQ|1|1|U|2550
6XIQ|1|1|U|2551
6XIQ|1|1|C|2552
6XIQ|1|1|U|2553
6XIQ|1|1|A|2554
6XIQ|1|1|G|2555
6XIQ|1|1|C|2556
6XIQ|1|1|A|2557
6XIQ|1|1|U|2558
6XIQ|1|1|U|2559
6XIQ|1|1|C|2560
6XIQ|1|1|A|2561
6XIQ|1|1|A|2562
6XIQ|1|1|G|2563
*
6XIQ|1|1|U|2578
6XIQ|1|1|G|2579
6XIQ|1|1|A|2580
6XIQ|1|1|U|2581
6XIQ|1|1|C|2582
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- RPL8A isoform 1
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
- Chain r
- RPS1A isoform 1
Coloring options: