J3_6XIQ_039
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UAGAUGG*CCAUAG*CGAAUUGCAAUGUCA
- Length
- 28 nucleotides
- Bulged bases
- 6XIQ|1|1|A|3172, 6XIQ|1|1|G|3173, 6XIQ|1|1|G|3176, 6XIQ|1|1|A|3215, 6XIQ|1|1|A|3267, 6XIQ|1|1|A|3268, 6XIQ|1|1|U|3270, 6XIQ|1|1|C|3272, 6XIQ|1|1|U|3275, 6XIQ|1|1|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|U|3171
6XIQ|1|1|A|3172
6XIQ|1|1|G|3173
6XIQ|1|1|A|3174
6XIQ|1|1|U|3175
6XIQ|1|1|G|3176
6XIQ|1|1|G|3177
*
6XIQ|1|1|C|3211
6XIQ|1|1|C|3212
6XIQ|1|1|A|3213
6XIQ|1|1|U|3214
6XIQ|1|1|A|3215
6XIQ|1|1|G|3216
*
6XIQ|1|1|C|3265
6XIQ|1|1|G|3266
6XIQ|1|1|A|3267
6XIQ|1|1|A|3268
6XIQ|1|1|U|3269
6XIQ|1|1|U|3270
6XIQ|1|1|G|3271
6XIQ|1|1|C|3272
6XIQ|1|1|A|3273
6XIQ|1|1|A|3274
6XIQ|1|1|U|3275
6XIQ|1|1|G|3276
6XIQ|1|1|U|3277
6XIQ|1|1|C|3278
6XIQ|1|1|A|3279
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: