J3_6XIQ_044

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAC*GGAC*GUUUG

Length

13 nucleotides

Bulged bases

6XIQ|1|2|A|1388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|2|U|1335
6XIQ|1|2|A|1336
6XIQ|1|2|A|1337
6XIQ|1|2|C|1338
*
6XIQ|1|2|G|1386
6XIQ|1|2|G|1387
6XIQ|1|2|A|1388
6XIQ|1|2|C|1389
*
6XIQ|1|2|G|1412
6XIQ|1|2|U|1413
6XIQ|1|2|U|1414
6XIQ|1|2|U|1415
6XIQ|1|2|G|1416

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AH

40S ribosomal protein S17-B

Chain AK

RPS20 isoform 1

Chain AT

RPS29A isoform 1

Chain AV

Guanine nucleotide-binding protein subunit beta-like protein

Chain v

Rps5p