J3_6XIQ_046
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUAGUUUGACAUUG*CUUAUU*AAGACAUUGUCAGGUGGGG
- Length
- 39 nucleotides
- Bulged bases
- 6XIQ|1|1|C|2431, 6XIQ|1|1|A|2432, 6XIQ|1|1|U|2433, 6XIQ|1|1|U|2434, 6XIQ|1|1|U|2513, 6XIQ|1|1|U|2514, 6XIQ|1|1|A|2593, 6XIQ|1|1|C|2594, 6XIQ|1|1|C|2600, 6XIQ|1|1|G|2603, 6XIQ|1|1|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIQ|1|1|C|2422
6XIQ|1|1|U|2423
6XIQ|1|1|A|2424
6XIQ|1|1|G|2425
6XIQ|1|1|U|2426
6XIQ|1|1|U|2427
6XIQ|1|1|U|2428
6XIQ|1|1|G|2429
6XIQ|1|1|A|2430
6XIQ|1|1|C|2431
6XIQ|1|1|A|2432
6XIQ|1|1|U|2433
6XIQ|1|1|U|2434
6XIQ|1|1|G|2435
*
6XIQ|1|1|C|2512
6XIQ|1|1|U|2513
6XIQ|1|1|U|2514
6XIQ|1|1|A|2515
6XIQ|1|1|U|2516
6XIQ|1|1|U|2517
*
6XIQ|1|1|A|2590
6XIQ|1|1|A|2591
6XIQ|1|1|G|2592
6XIQ|1|1|A|2593
6XIQ|1|1|C|2594
6XIQ|1|1|A|2595
6XIQ|1|1|U|2596
6XIQ|1|1|U|2597
6XIQ|1|1|G|2598
6XIQ|1|1|U|2599
6XIQ|1|1|C|2600
6XIQ|1|1|A|2601
6XIQ|1|1|G|2602
6XIQ|1|1|G|2603
6XIQ|1|1|U|2604
6XIQ|1|1|G|2605
6XIQ|1|1|G|2606
6XIQ|1|1|G|2607
6XIQ|1|1|G|2608
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain AX
- Transfer RNA; tRNA
- Chain G
- RPL8A isoform 1
- Chain N
- 60S ribosomal protein L15-A
- Chain i
- 60S ribosomal protein L36-A
- Chain o
- 60S ribosomal protein L42-A
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