J3_6XIQ_047

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGAG*CAGG*CUCGAAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIQ|1|2|A|760
6XIQ|1|2|G|761
6XIQ|1|2|A|762
6XIQ|1|2|G|763
*
6XIQ|1|2|C|773
6XIQ|1|2|A|774
6XIQ|1|2|G|775
6XIQ|1|2|G|776
*
6XIQ|1|2|C|784
6XIQ|1|2|U|785
6XIQ|1|2|C|786
6XIQ|1|2|G|787
6XIQ|1|2|A|788
6XIQ|1|2|A|789
6XIQ|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain u

40S ribosomal protein S4-A

Chain z

40S ribosomal protein S9-A