J3_6XIR_001
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAA*UUGGAG*CGAAG
- Length
- 15 nucleotides
- Bulged bases
- 6XIR|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|1|C|113
6XIR|1|1|A|114
6XIR|1|1|A|115
6XIR|1|1|A|116
*
6XIR|1|1|U|153
6XIR|1|1|U|154
6XIR|1|1|G|155
6XIR|1|1|G|156
6XIR|1|1|A|157
6XIR|1|1|G|158
*
6XIR|1|1|C|263
6XIR|1|1|G|264
6XIR|1|1|A|265
6XIR|1|1|A|266
6XIR|1|1|G|267
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain G
- RPL8A isoform 1
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
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