J3_6XIR_003
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGACAUGG*CUGG*CAUAAU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|1|A|436
6XIR|1|1|G|437
6XIR|1|1|A|438
6XIR|1|1|C|439
6XIR|1|1|A|440
6XIR|1|1|U|441
6XIR|1|1|G|442
6XIR|1|1|G|443
*
6XIR|1|1|C|492
6XIR|1|1|U|493
6XIR|1|1|G|494
6XIR|1|1|G|495
*
6XIR|1|1|C|618
6XIR|1|1|A|619
6XIR|1|1|U|620
6XIR|1|1|A|621
6XIR|1|1|A|622
6XIR|1|1|U|623
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- RPL32 isoform 1
- Chain f
- 60S ribosomal protein L33-A
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