J3_6XIR_013
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAGG*CUGAU
- Length
- 27 nucleotides
- Bulged bases
- 6XIR|1|1|G|2549, 6XIR|1|1|U|2550, 6XIR|1|1|U|2551, 6XIR|1|1|C|2552, 6XIR|1|1|U|2553, 6XIR|1|1|A|2554, 6XIR|1|1|U|2558, 6XIR|1|1|U|2559, 6XIR|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XIR|1|1|A|2529
6XIR|1|1|G|2530
6XIR|1|1|C|2531
6XIR|1|1|U|2532
*
6XIR|1|1|A|2547
6XIR|1|1|C|2548
6XIR|1|1|G|2549
6XIR|1|1|U|2550
6XIR|1|1|U|2551
6XIR|1|1|C|2552
6XIR|1|1|U|2553
6XIR|1|1|A|2554
6XIR|1|1|G|2555
6XIR|1|1|C|2556
6XIR|1|1|A|2557
6XIR|1|1|U|2558
6XIR|1|1|U|2559
6XIR|1|1|C|2560
6XIR|1|1|A|2561
6XIR|1|1|A|2562
6XIR|1|1|G|2563
6XIR|1|1|G|2564
*
6XIR|1|1|C|2577
6XIR|1|1|U|2578
6XIR|1|1|G|2579
6XIR|1|1|A|2580
6XIR|1|1|U|2581
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- RPL8A isoform 1
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
Coloring options: