J3_6XIR_016
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XIR_016 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.3387
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6XIR|1|1|C|3298
6XIR|1|1|A|3299
6XIR|1|1|U|3300
*
6XIR|1|1|A|3314
6XIR|1|1|G|3315
6XIR|1|1|A|3316
6XIR|1|1|U|3317
6XIR|1|1|G|3318
*
6XIR|1|1|C|3388
6XIR|1|1|U|3389
6XIR|1|1|G|3390
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain B
- RPL3 isoform 1
- Chain P
- 60S ribosomal protein L17-A
- Chain d
- 60S ribosomal protein L31-A
Coloring options: