J3_6XIR_021

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

6XIR|1|2|C|1162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XIR|1|2|C|1161
6XIR|1|2|C|1162
6XIR|1|2|A|1163
6XIR|1|2|G|1164
*
6XIR|1|2|C|1581
6XIR|1|2|U|1582
6XIR|1|2|A|1583
6XIR|1|2|G|1584
6XIR|1|2|U|1585
6XIR|1|2|A|1586
6XIR|1|2|A|1587
*
6XIR|1|2|U|1609
6XIR|1|2|G|1610
6XIR|1|2|A|1611
6XIR|1|2|U|1612
6XIR|1|2|U|1613
6XIR|1|2|A|1614
6XIR|1|2|C|1615
6XIR|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AS

RPS28A isoform 1

Chain v

Rps5p